Connect Git Repo to Rasa-X with different organization

On Integrated Version Control Doc, we read that project structure should be like this:

.
├── config.yml
├── ...
├── data
│   ├── nlu.md
│   ├── ...
│   └── stories.md
└── domain.yml 

Is it possible to make the connection with slightly different structures, like mine? Here it goes:

.
buildspecs
docker
docs
env
bot
├── config.yml
├── ...
├── data
│   ├── nlu.md
│   ├── ...
│   └── stories.md
└── domain.yml

We followed this structure to keep bot context disjunct from other context inside the project.